SoSophia Yanc

lizard Sophia Yancopoulosleftlizard

CV



Astrophysics

Yancopoulos, S.,1996, Panning for Galactic Old Local Dead Stars in the Einstein database, Bull. Am. Astron.Soc.
 
Yancopoulos, S., Helfand, D.J., Hamilton, T.T., Halpern, J.P., Seward, F.D., and Becker, R.H.,  The Detection of Pulsed X-Ray Emission from a NearbyRadio Pulsar, Bull. Am. Astron. Soc., Jan 1993

Yancopoulos, S., Becker,1991, The Normal Branch QPO in Low Mass X-Ray Binaries, Bull. Am. Astron. Soc. 23:2 117

Shaham, J. and Yancopoulos, S. 1987,  Periodic SN1987a Neutrinos:  Fact or Fancy?,  News Letter of the Astronomical Society of New York III:3 19

Biophysics

Yancopoulos, S., Mezei, M., Osman, O., 2001 Internal Hydration Sites of Bacteriorhodopsin  Biophys J., 80 No1 Part 2 of 2

Yancopoulos, S., Mezei, M., Osman, O., 2000 Effect of Internal Water on Receptor  Binding and Activation, Biophys. J., 78 No1 Part 2 of 2

Comparative Genomics

Published in Bioinformatics: download pdf

Efficient sorting of genomic permutations by translocation, inversion and block interchange
Sophia Yancopoulos1, Oliver Attie2 and Richard Friedberg3

1 The Feinstein Institute for Medical Research, North Shore-LIJ Health System, Manhasset, NY 11030, USA,
2 Center for the Study of Gene Structure and Function, Hunter College, NY, NY 10021, USA and
3 Department of Physics, Columbia University, NY, NY 10027, USA

Received on May 3, 2005; revised on June 2, 2005; accepted on June 8, 2005
Advance Access publication June 13, 2005


Genome rearrangement by the double cut and join operation. 

Friedberg R, Darling AE, Yancopoulos S. Methods Mol Biol. 2008;452:385-416. Review.

Sorting Genomes with Insertions, Deletions and Duplications by DCJ.
Yancopoulos S, Friedberg S
RECOMB-CG 2008: 170-183

Talks

  Oct 2008
6th RECOMB Satellite Workshop on Comparative Genomics   
Sorting genomes with insertions, deletions and duplications by DCJ
  Sept 2005 Third RECOMB Satellite Workshop on Comparative Genomics   

True GRITT: Genomic Rearrangement by Inversion, Translocation & (Generalized) Transposition

Posters

ISMB 2008
Bounding Generalized Transpositions in Genome Rearrrangement by DCJ
CSHL Genomes 2007
Are breakpoints reused in mammalian evolution?
ISMB 2005 A Unifying Elementary Operation to Calibrate Genomic Distance
RECOMB 2005
Calibrating Genomic Distance via Universal Operation
CSHL Genomes
CALIBRATING GENOMIC DISTANCE VIA UNIVERSAL OPERATION